2021-09-02 15:54:44,009 INFO BenchmarkPipeline --- START PROCESSING 'SRR5453532-SRR5453533-SRR5453534' --- 2021-09-02 15:54:44,010 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453532.sra 2021-09-02 15:54:44,010 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__ 2021-09-02 15:54:44,010 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpi7op4g60 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453532.sra" 2021-09-02 15:55:41,991 INFO SimpleSubprocess Sra2FastQ - 0:00:57 2021-09-02 15:55:41,992 DEBUG SimpleSubprocess gzip /tmp/tmpi7op4g60/* 2021-09-02 15:59:13,247 INFO SimpleSubprocess GZipFastQ - 0:03:31 2021-09-02 15:59:13,248 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/fastq"; mv /tmp/tmpi7op4g60/SRR5453532_1.fastq.gz /tmp/tmpi7op4g60/SRR5453532_R1.fastq.gz; mv /tmp/tmpi7op4g60/SRR5453532_2.fastq.gz /tmp/tmpi7op4g60/SRR5453532_R2.fastq.gz; cp /tmp/tmpi7op4g60/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/fastq" 2021-09-02 15:59:14,080 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:59:14,184 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453533.sra 2021-09-02 15:59:14,185 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__ 2021-09-02 15:59:14,185 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpd_qz_i0c "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453533.sra" 2021-09-02 15:59:51,949 INFO SimpleSubprocess Sra2FastQ - 0:00:37 2021-09-02 15:59:51,949 DEBUG SimpleSubprocess gzip /tmp/tmpd_qz_i0c/* 2021-09-02 16:02:40,398 INFO SimpleSubprocess GZipFastQ - 0:02:48 2021-09-02 16:02:40,399 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/fastq"; mv /tmp/tmpd_qz_i0c/SRR5453533_1.fastq.gz /tmp/tmpd_qz_i0c/SRR5453533_R1.fastq.gz; mv /tmp/tmpd_qz_i0c/SRR5453533_2.fastq.gz /tmp/tmpd_qz_i0c/SRR5453533_R2.fastq.gz; cp /tmp/tmpd_qz_i0c/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/fastq" 2021-09-02 16:02:40,968 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:02:41,050 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453534.sra 2021-09-02 16:02:41,050 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__ 2021-09-02 16:02:41,050 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmp1zvs1987 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453534.sra" 2021-09-02 16:03:20,976 INFO SimpleSubprocess Sra2FastQ - 0:00:39 2021-09-02 16:03:20,976 DEBUG SimpleSubprocess gzip /tmp/tmp1zvs1987/* 2021-09-02 16:06:16,396 INFO SimpleSubprocess GZipFastQ - 0:02:55 2021-09-02 16:06:16,397 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/fastq"; mv /tmp/tmp1zvs1987/SRR5453534_1.fastq.gz /tmp/tmp1zvs1987/SRR5453534_R1.fastq.gz; mv /tmp/tmp1zvs1987/SRR5453534_2.fastq.gz /tmp/tmp1zvs1987/SRR5453534_R2.fastq.gz; cp /tmp/tmp1zvs1987/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/fastq" 2021-09-02 16:06:16,981 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:06:17,060 INFO Juicer Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__ 2021-09-02 16:06:17,060 INFO Juicer Genome assembly: mm10 2021-09-02 16:06:17,060 INFO Juicer Genome FASTA path: /Data/DataBases/mm10/mm10_canonic.fa 2021-09-02 16:06:17,061 INFO Juicer Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-02 16:06:17,061 INFO Juicer Enzyme: DpnII 2021-09-02 16:06:17,061 INFO Juicer Restriction sites path: /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt 2021-09-02 16:06:17,061 INFO Juicer Threads: 10 2021-09-02 16:06:17,061 DEBUG SimpleSubprocess rm -rf "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits" 2021-09-02 16:06:17,070 INFO SimpleSubprocess RemoveTrash - 0:00:00 2021-09-02 16:06:17,070 DEBUG SimpleSubprocess bash "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh" -t 10 -D "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer" -g mm10 -z "/Data/DataBases/mm10/mm10_canonic.fa" -p "/Data/DataBases/mm10/mm10_canonic.chrom.sizes" -s DpnII -y "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt" -d "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__" 2021-09-02 16:42:07,849 INFO SimpleSubprocess Juicer - 0:35:50 2021-09-02 16:42:07,849 INFO Juicer Using /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt as site file (-: Looking for fastq files...fastq files exist (-: Aligning files matching /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/fastq/*_R*.fastq* to genome mm10 with site file /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt (-: Created /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits and /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned. bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits/SRR5453532_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits/SRR5453532_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits/SRR5453532.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits/SRR5453532.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits/SRR5453533_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits/SRR5453533_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits/SRR5453533.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits/SRR5453533.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits/SRR5453534_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits/SRR5453534_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits/SRR5453534.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/splits/SRR5453534.fastq.gz.sam done successfully (-: Finished sorting all sorted files into a single merge. WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-02T16:34:26,872] [Globals.java:138] [main] Development mode is enabled Using 1 CPU thread(s) Not including fragment map Start preprocess Writing header Writing body .................................................................................................................................................................................................................................. Writing footer Finished preprocess Calculating norms for zoom BP_2500000 Calculating norms for zoom BP_1000000 Calculating norms for zoom BP_500000 Calculating norms for zoom BP_250000 Calculating norms for zoom BP_100000 Calculating norms for zoom BP_50000 Calculating norms for zoom BP_25000 Calculating norms for zoom BP_10000 Calculating norms for zoom BP_5000 Calculating norms for zoom BP_1000 Finished writing norms WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-02T16:38:31,915] [Globals.java:138] [main] Development mode is enabled Using 1 CPU thread(s) Not including fragment map Start preprocess Writing header Writing body .............................................................................................................................................................................................................................. Writing footer Finished preprocess Calculating norms for zoom BP_2500000 Calculating norms for zoom BP_1000000 Calculating norms for zoom BP_500000 Calculating norms for zoom BP_250000 Calculating norms for zoom BP_100000 Calculating norms for zoom BP_50000 Calculating norms for zoom BP_25000 Calculating norms for zoom BP_10000 Calculating norms for zoom BP_5000 Calculating norms for zoom BP_1000 Finished writing norms /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools is post-processing Hi-C for mm10 Data read from /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_30.hic. Motifs read from /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/references/motif ARROWHEAD: WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-02T16:42:07,606] [Globals.java:138] [main] Development mode is enabled Reading file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_30.hic Using 1 CPU thread(s) HiCCUPS: GPUs are not installed so HiCCUPs cannot be run (-: Postprocessing successfully completed, maps too sparse to annotate or GPUs unavailable (-: (-: Pipeline successfully completed (-: Run cleanup.sh to remove the splits directory Check /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned for results 2021-09-02 16:42:07,871 INFO MakeInterPairs Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/merged_nodups.txt 2021-09-02 16:42:07,871 INFO MakeInterPairs Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt 2021-09-02 16:42:07,872 DEBUG SimpleSubprocess awk -F " " '{print $2 "\t" $3 "\t" $6 "\t" $7}' "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/merged_nodups.txt" > "/tmp/tmputgm2_bt/inter.pairs.txt" 2021-09-02 16:42:10,771 INFO SimpleSubprocess MakeInterPairs - 0:00:02 2021-09-02 16:42:10,772 DEBUG SimpleSubprocess cp "/tmp/tmputgm2_bt/inter.pairs.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt" 2021-09-02 16:42:10,847 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:42:10,860 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt 2021-09-02 16:42:10,861 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_5kb.cool 2021-09-02 16:42:10,861 INFO Pairs2Cool Genome assembly: mm10 2021-09-02 16:42:10,861 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-02 16:42:10,861 INFO Pairs2Cool Resolution [bp]: 5000 2021-09-02 16:42:10,861 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":5000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt" "/tmp/tmpeqigowxu/inter_no_balanced.cool" 2021-09-02 16:42:19,062 INFO SimpleSubprocess MakeCool - 0:00:08 2021-09-02 16:42:19,063 DEBUG SimpleSubprocess cp "/tmp/tmpeqigowxu/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_5kb.cool" 2021-09-02 16:42:19,076 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:42:19,077 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt 2021-09-02 16:42:19,077 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_10kb.cool 2021-09-02 16:42:19,077 INFO Pairs2Cool Genome assembly: mm10 2021-09-02 16:42:19,077 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-02 16:42:19,077 INFO Pairs2Cool Resolution [bp]: 10000 2021-09-02 16:42:19,077 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":10000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt" "/tmp/tmpl1z8c_he/inter_no_balanced.cool" 2021-09-02 16:42:24,743 INFO SimpleSubprocess MakeCool - 0:00:05 2021-09-02 16:42:24,743 DEBUG SimpleSubprocess cp "/tmp/tmpl1z8c_he/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_10kb.cool" 2021-09-02 16:42:24,754 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:42:24,755 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt 2021-09-02 16:42:24,755 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_20kb.cool 2021-09-02 16:42:24,756 INFO Pairs2Cool Genome assembly: mm10 2021-09-02 16:42:24,756 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-02 16:42:24,756 INFO Pairs2Cool Resolution [bp]: 20000 2021-09-02 16:42:24,756 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":20000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt" "/tmp/tmp9zupdefk/inter_no_balanced.cool" 2021-09-02 16:42:29,586 INFO SimpleSubprocess MakeCool - 0:00:04 2021-09-02 16:42:29,587 DEBUG SimpleSubprocess cp "/tmp/tmp9zupdefk/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_20kb.cool" 2021-09-02 16:42:29,598 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:42:29,599 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt 2021-09-02 16:42:29,599 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_25kb.cool 2021-09-02 16:42:29,599 INFO Pairs2Cool Genome assembly: mm10 2021-09-02 16:42:29,599 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-02 16:42:29,599 INFO Pairs2Cool Resolution [bp]: 25000 2021-09-02 16:42:29,599 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":25000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt" "/tmp/tmp_oq_0n52/inter_no_balanced.cool" 2021-09-02 16:42:34,128 INFO SimpleSubprocess MakeCool - 0:00:04 2021-09-02 16:42:34,129 DEBUG SimpleSubprocess cp "/tmp/tmp_oq_0n52/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_25kb.cool" 2021-09-02 16:42:34,140 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:42:34,141 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt 2021-09-02 16:42:34,141 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_50kb.cool 2021-09-02 16:42:34,141 INFO Pairs2Cool Genome assembly: mm10 2021-09-02 16:42:34,141 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-02 16:42:34,141 INFO Pairs2Cool Resolution [bp]: 50000 2021-09-02 16:42:34,141 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":50000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt" "/tmp/tmp4rwo25pm/inter_no_balanced.cool" 2021-09-02 16:42:38,143 INFO SimpleSubprocess MakeCool - 0:00:04 2021-09-02 16:42:38,143 DEBUG SimpleSubprocess cp "/tmp/tmp4rwo25pm/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_50kb.cool" 2021-09-02 16:42:38,154 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:42:38,156 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_5kb.cool 2021-09-02 16:42:38,156 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_5kb.cool 2021-09-02 16:42:38,156 INFO CTaleNormalize Capture: chr11:32,190,000-32,335,000 2021-09-02 16:42:38,156 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_5kb.cool" "/tmp/tmpae11f9zt/inter.cool" 2021-09-02 16:42:38,168 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-02 16:42:38,169 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmpae11f9zt/inter.cool" "chr11:32,190,000-32,335,000" 2021-09-02 16:42:42,024 INFO SimpleSubprocess NormalizeCool - 0:00:03 2021-09-02 16:42:42,024 DEBUG SimpleSubprocess cp "/tmp/tmpae11f9zt/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_5kb.cool" 2021-09-02 16:42:42,038 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:42:42,039 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_10kb.cool 2021-09-02 16:42:42,039 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_10kb.cool 2021-09-02 16:42:42,039 INFO CTaleNormalize Capture: chr11:32,190,000-32,335,000 2021-09-02 16:42:42,039 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_10kb.cool" "/tmp/tmp54b3aqq8/inter.cool" 2021-09-02 16:42:42,051 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-02 16:42:42,051 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmp54b3aqq8/inter.cool" "chr11:32,190,000-32,335,000" 2021-09-02 16:42:44,179 INFO SimpleSubprocess NormalizeCool - 0:00:02 2021-09-02 16:42:44,179 DEBUG SimpleSubprocess cp "/tmp/tmp54b3aqq8/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_10kb.cool" 2021-09-02 16:42:44,191 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:42:44,192 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_20kb.cool 2021-09-02 16:42:44,192 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_20kb.cool 2021-09-02 16:42:44,192 INFO CTaleNormalize Capture: chr11:32,190,000-32,335,000 2021-09-02 16:42:44,193 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_20kb.cool" "/tmp/tmphq6no8q_/inter.cool" 2021-09-02 16:42:44,204 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-02 16:42:44,204 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmphq6no8q_/inter.cool" "chr11:32,190,000-32,335,000" 2021-09-02 16:42:45,734 INFO SimpleSubprocess NormalizeCool - 0:00:01 2021-09-02 16:42:45,734 DEBUG SimpleSubprocess cp "/tmp/tmphq6no8q_/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_20kb.cool" 2021-09-02 16:42:45,745 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:42:45,746 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_25kb.cool 2021-09-02 16:42:45,746 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_25kb.cool 2021-09-02 16:42:45,746 INFO CTaleNormalize Capture: chr11:32,190,000-32,335,000 2021-09-02 16:42:45,746 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_25kb.cool" "/tmp/tmpf72dqdzt/inter.cool" 2021-09-02 16:42:45,757 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-02 16:42:45,757 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmpf72dqdzt/inter.cool" "chr11:32,190,000-32,335,000" 2021-09-02 16:42:46,993 INFO SimpleSubprocess NormalizeCool - 0:00:01 2021-09-02 16:42:46,994 DEBUG SimpleSubprocess cp "/tmp/tmpf72dqdzt/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_25kb.cool" 2021-09-02 16:42:47,005 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:42:47,006 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_50kb.cool 2021-09-02 16:42:47,006 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_50kb.cool 2021-09-02 16:42:47,006 INFO CTaleNormalize Capture: chr11:32,190,000-32,335,000 2021-09-02 16:42:47,006 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_50kb.cool" "/tmp/tmpi82d0ha6/inter.cool" 2021-09-02 16:42:47,016 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-02 16:42:47,016 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmpi82d0ha6/inter.cool" "chr11:32,190,000-32,335,000" 2021-09-02 16:42:48,088 INFO SimpleSubprocess NormalizeCool - 0:00:01 2021-09-02 16:42:48,089 DEBUG SimpleSubprocess cp "/tmp/tmpi82d0ha6/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_50kb.cool" 2021-09-02 16:42:48,099 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:42:48,102 DEBUG SimpleSubprocess echo > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/vector.txt 2021-09-02 16:42:48,110 INFO SimpleSubprocess MakeVector - 0:00:00 2021-09-02 16:42:48,110 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_5kb.cool 2021-09-02 16:42:48,110 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/vector.txt 2021-09-02 16:42:48,110 INFO AddWeight Chromosome: chr11 2021-09-02 16:42:48,110 INFO AddWeight Resolution [bp]: 5000 2021-09-02 16:42:48,192 INFO AddWeight AddWeight successfully finished 2021-09-02 16:42:48,193 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_10kb.cool 2021-09-02 16:42:48,193 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/vector.txt 2021-09-02 16:42:48,193 INFO AddWeight Chromosome: chr11 2021-09-02 16:42:48,193 INFO AddWeight Resolution [bp]: 10000 2021-09-02 16:42:48,227 INFO AddWeight AddWeight successfully finished 2021-09-02 16:42:48,227 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_20kb.cool 2021-09-02 16:42:48,227 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/vector.txt 2021-09-02 16:42:48,228 INFO AddWeight Chromosome: chr11 2021-09-02 16:42:48,228 INFO AddWeight Resolution [bp]: 20000 2021-09-02 16:42:48,258 INFO AddWeight AddWeight successfully finished 2021-09-02 16:42:48,258 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_25kb.cool 2021-09-02 16:42:48,258 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/vector.txt 2021-09-02 16:42:48,258 INFO AddWeight Chromosome: chr11 2021-09-02 16:42:48,258 INFO AddWeight Resolution [bp]: 25000 2021-09-02 16:42:48,286 INFO AddWeight AddWeight successfully finished 2021-09-02 16:42:48,286 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_50kb.cool 2021-09-02 16:42:48,286 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/vector.txt 2021-09-02 16:42:48,286 INFO AddWeight Chromosome: chr11 2021-09-02 16:42:48,286 INFO AddWeight Resolution [bp]: 50000 2021-09-02 16:42:48,307 INFO AddWeight AddWeight successfully finished 2021-09-02 16:42:48,308 INFO Vector2HiC Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.hic 2021-09-02 16:42:48,308 INFO Vector2HiC Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_norm.hic 2021-09-02 16:42:48,309 INFO Vector2HiC Vector: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/vector.txt 2021-09-02 16:42:48,309 INFO Vector2HiC Threads: 10 2021-09-02 16:42:48,327 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.hic" "/tmp/tmph94kp1id/inter.hic" 2021-09-02 16:42:48,492 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-02 16:42:48,492 INFO Vector2HiC Vector: vector c-tale_normalization chr11 5000 BP 2021-09-02 16:42:48,493 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmph94kp1id/inter.hic" "/tmp/tmph94kp1id/vector.txt" 2021-09-02 16:42:52,392 INFO SimpleSubprocess NormalizeHiC - 0:00:03 2021-09-02 16:42:52,392 INFO Vector2HiC Vector: vector c-tale_normalization chr11 10000 BP 2021-09-02 16:42:52,393 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmph94kp1id/inter.hic" "/tmp/tmph94kp1id/vector.txt" 2021-09-02 16:42:55,890 INFO SimpleSubprocess NormalizeHiC - 0:00:03 2021-09-02 16:42:55,891 INFO Vector2HiC Vector: vector c-tale_normalization chr11 20000 BP 2021-09-02 16:42:55,891 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmph94kp1id/inter.hic" "/tmp/tmph94kp1id/vector.txt" 2021-09-02 16:42:59,736 INFO SimpleSubprocess NormalizeHiC - 0:00:03 2021-09-02 16:42:59,737 INFO Vector2HiC Vector: vector c-tale_normalization chr11 25000 BP 2021-09-02 16:42:59,757 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmph94kp1id/inter.hic" "/tmp/tmph94kp1id/vector.txt" 2021-09-02 16:43:03,589 INFO SimpleSubprocess NormalizeHiC - 0:00:03 2021-09-02 16:43:03,589 INFO Vector2HiC Vector: vector c-tale_normalization chr11 50000 BP 2021-09-02 16:43:03,590 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmph94kp1id/inter.hic" "/tmp/tmph94kp1id/vector.txt" 2021-09-02 16:43:07,414 INFO SimpleSubprocess NormalizeHiC - 0:00:03 2021-09-02 16:43:07,415 DEBUG SimpleSubprocess cp "/tmp/tmph94kp1id/inter.hic" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_norm.hic" 2021-09-02 16:43:07,661 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 16:43:07,962 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/merged_nodups.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/merged_nodups.txt" 2021-09-02 16:43:08,759 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:08,759 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.pairs.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter.pairs.txt" 2021-09-02 16:43:08,829 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:08,830 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/vector.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/vector.txt" 2021-09-02 16:43:08,840 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:08,840 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_norm.hic" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter.hic" 2021-09-02 16:43:09,063 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:09,063 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter_statistics.txt" 2021-09-02 16:43:09,073 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:09,073 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_5kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter_no_balanced_5kb.cool" 2021-09-02 16:43:09,085 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:09,085 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_5kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter_5kb.cool" 2021-09-02 16:43:09,097 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:09,098 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_10kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter_no_balanced_10kb.cool" 2021-09-02 16:43:09,109 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:09,110 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_10kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter_10kb.cool" 2021-09-02 16:43:09,121 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:09,121 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_20kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter_no_balanced_20kb.cool" 2021-09-02 16:43:09,133 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:09,133 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_20kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter_20kb.cool" 2021-09-02 16:43:09,144 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:09,144 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_25kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter_no_balanced_25kb.cool" 2021-09-02 16:43:09,155 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:09,155 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_25kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter_25kb.cool" 2021-09-02 16:43:09,166 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:09,166 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_no_balanced_50kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter_no_balanced_50kb.cool" 2021-09-02 16:43:09,177 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:09,177 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__/aligned/inter_50kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/inter_50kb.cool" 2021-09-02 16:43:09,188 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 16:43:09,190 DEBUG SimpleSubprocess rm -rf "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__" 2021-09-02 16:43:12,368 INFO SimpleSubprocess RemoveTemp - 0:00:03 2021-09-02 16:43:12,368 INFO BenchmarkPipeline 'SRR5453532-SRR5453533-SRR5453534' FINISHED, SUMMARY TIME - 0:48:28